rs50030507 SNP Detail

Summary

• ID
  rs50030507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:103123186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT AGAAATATAG TGTTAAAAAT
  Y
  CTACCTACAA AACTTATTAG TAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63632000	NES17049815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C		C	T	C	C		C
ss325086938	CHEV_15_103045190	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50030507					SNP	C	C	C	C	C	C	C	T	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63632000	NES17049815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103123186 () rs orientation: forward

Symbol	Name	Function Class
Cbx5	chromobox 5	Intron
Rr391239	regulatory region 391239	within coordinates
Rr510552	regulatory region 510552	195 bp distal
Rr510553	regulatory region 510553	117 bp proximal
Rr510554	regulatory region 510554	536 bp proximal
Tssr136729	transcription start site region 136729	1507 bp upstream
Tssr136730	transcription start site region 136730	359 bp downstream
Tssr136731	transcription start site region 136731	526 bp downstream
Tssr136732	transcription start site region 136732	1502 bp downstream