rs50031415 SNP Detail

Summary

• ID
  rs50031415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGAATG AATATGCCTC
  CCTAATGATG CCTTATGAAG CCATCACAAA TAAAGCACTA TTGGTCAGGC ATGATGATTC
  CTGCCTATAG TCCTAGCATT CGGGAAGCAG AGGCAGGAAA GTTGAGGTAA GTTCCAGGCC
  AACCTAACCT ATATGGCTAG GCGTGGAATG CAAAGTAGAT CCTGAGTCCA AATTTTAATT
  S
  ATTGATTAAT AAGTTAAATG GATGTAACAG TGAATCCCCT GTAAGACTGA TATTTAATAT
  CCATTTAAGT CTTAAACAAT TGCGACCTTT ACACTACTCT GTGCCGCCAC CTGGTGGCAA
  CTGTGTAGAT TGCTAGTTGC TTCCTCCCCA TTCCCACCCC AGGAAGTCCT AAAGTTACTA
  GGAACTACTC TGGACTCCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145637776	ENSMUSSNP351382	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322388631	CHEV_7_116077560	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50031415					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	220 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1112 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	369 bp upstream
Rr400539	regulatory region 400539	111 bp upstream
Rr652951	regulatory region 652951	1343 bp distal
Rr652952	regulatory region 652952	within coordinates
Rr652953	regulatory region 652953	101 bp proximal
Tssr68456	transcription start site region 68456	359 bp upstream
Tssr68457	transcription start site region 68457	471 bp upstream