rs50032497 SNP Detail

Summary

• ID
  rs50032497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41365890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTTGT GAGCTTTCTG
  GTGGGATTCC TGGGTAAGTC TTGACAGCAG ATGTTGAAAG GCCCAACAGA TGTGGATGTG
  GAGAACCAGT GCTTATAGAC CCAGCCTCAC ATTGCCCTGG GATATGTTGG CATTTTGAGC
  TGTGAACTTT ATACCTACAG AGGCACTGGG AGGTGAGGTT GTGTTATGTT GAGTATCTGT
  S
  AACCGGAGAC ATGGCTCTGT AGGTAAAGCG TGTGCTGTTC AAGTGTGAGG TTCTGGGTTA
  AGATCTCCAA GACCCATGGG AAGCTGAATG AGGAAGTGCA TGCCCGTAAG AGCAGCGTGG
  CTCTGGCAGG ATGGGAGGTA GAAAGAGAAC TCCCCACTAG CTTGCATGTC AGCTAGCTTG
  CTGTACTTGG TGACAAATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60600913	NES16305503	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50032497					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600913	NES16305503	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41365890 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1881 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77036	transcription start site region 77036	1995 bp downstream
Tssr77037	transcription start site region 77037	1788 bp downstream
Tssr77038	transcription start site region 77038	216 bp downstream
Tssr77039	transcription start site region 77039	1105 bp upstream
Tssr77040	transcription start site region 77040	1150 bp upstream