rs50035417 SNP Detail

Summary

• ID
  rs50035417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:10363668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCCTCC CGCAACATCC
  ACTCCTTGGA CCACCTGAAG TGAGTGTGCG GGGCGCGCGG CGGGAAGGCC GCGGGGCCGG
  GCGCGGACGC CCAGACGCGG GCTTGGCTTG CGGGGCTCGG AGGTGCGAGG AAGACAGGGG
  TGCCGCGGGA GGGTTGTATG TTGGTTATCC GCAAGGCTTT GGAGTCAGGG CACCTGGCTT
  Y
  GAACCCTGAC TCTTTCACTT CTGGCTCTGT GTGTGACCTT GGACAAGTCG CGTGATTTTT
  CAGTCTCCAG ACACCTAACC TGAAAAGTAA GGGCATCGTT GAGTTTTCGT TTTGTGGGCT
  GGAGTTGTCT TGATGTCCCG GGGACAGACA GTGGCCACTG GGCTTCTTGG GGTAGCACTT
  CTTGGACTGC ATAGTTACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147845436	ENSMUSSNP6090781	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50035417					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10363668 () rs orientation: forward

Symbol	Name	Function Class
Clec16a	C-type lectin domain family 16, member A	Intron
Rr404677	regulatory region 404677	373 bp downstream
Rr511519	regulatory region 511519	385 bp distal
Tssr137042	transcription start site region 137042	453 bp downstream
Tssr137043	transcription start site region 137043	416 bp downstream
Tssr137044	transcription start site region 137044	377 bp downstream
Tssr137045	transcription start site region 137045	350 bp downstream