rs50035603 SNP Detail

Summary

• ID
  rs50035603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84706539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATTAACCA TTAGAGAGAA TGGCTGGCAT TTCTGTGCCA
  TAAACCTGGT GTCAGACCAC TGCTCCAGCT CCTCTGCCAG GGTGGAGTTA GGATTCTCTC
  Y
  CCACCAGCAC CCTACAAAGT CATCATGGTT TTGTCCCCAT TTGCTCCCGT AGAAAACTGA
  GACCCAGAGA GATGAGTTGT CAGAAGACTC ACAGCTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145368183	ENSMUSSNP5369342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322746881	CHEV_8_86503809	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50035603					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84706539 () rs orientation: forward

Symbol	Name	Function Class
Prkaca	protein kinase, cAMP dependent, catalytic, alpha	within coordinates
Rr666366	regulatory region 666366	1787 bp distal
Tssr78320	transcription start site region 78320	1449 bp downstream
Tssr78321	transcription start site region 78321	602 bp upstream