rs50036325 SNP Detail

Summary

• ID
  rs50036325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3894304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACAGCAC GGGGTTCTTG
  ATAGCTGATA CTTCCCAGAA GGAACACAAG GAAGCAGGCT GAAATCTTTA ATGAAGTGGC
  AATCTCTCCA ATAGGAAATG GATACTATGT ATGTATTTTC TCCACCTAAG ACCCAGGGAG
  AATTAGTGCC ACCACAGCAG CAGGCAAAGT CGGTGAAAAG GAGCACCAAT GTTGCAAATA
  R
  AAAACTTGAG CTAGACTCCA GAGTCAACTT TGGGAACAGA CTGAGCAAAC CAGCCAAGGT
  TGAGAAGGTG TTTGCAGAAC ATGATGCAAA GATACACAAG AAATCAGAGA AGATACGGAT
  CCACTGTTAA GTAAAACCAG CTTCTCTGTA GATAGAAATC ACAAGAGATG TCTTCTACAC
  AGAGCTCTTT TTTTTTTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52585010	NES15684337	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50036325					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52585010	NES15684337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3894304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi7905	CpG island 7905			914 bp proximal
Rr370033	regulatory region 370033			1285 bp upstream
Rr510762	regulatory region 510762			1283 bp distal
Rr510763	regulatory region 510763			1377 bp proximal
Rr510764	regulatory region 510764			1611 bp proximal
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant
Tssr139752	transcription start site region 139752			1338 bp downstream