rs50036555 SNP Detail

Summary

• ID
  rs50036555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91151515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTACA GCAATAGAAA
  CCCTGAGGGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTC TTTATATATG
  TATGTATGTA TATATGTGTG TGTATATATA CGCGCACACA TACATACATA TACATATATA
  TTCATTCTAC ACACATAAAA CAGGGACTTC ATAAATTTAG AGTGTAGACA CATCAGAGAC
  R
  ATAGCTAAGT TATTCTGGGA CAAAGCTCTC TCAGAGAGAC TGCTCACAAT GGGGAAGTGC
  TGGAGACCTT TGTAGAGACA GGAAAAGACC AGCTTGAACA AGGCTCCAGG ATGACTTGAC
  TCTTTGAGGA AGGAGAAGTT AAGATATTAC ATGTGAACCA CAAGTCAGGT GCCAGAGGAC
  AAAAATAATA ACGTTGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60507294	NES16338834	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50036555					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60507294	NES16338834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91151515 () rs orientation: forward

Symbol	Name	Function Class
Gm60057	predicted gene, 60057	within coordinates
Rr519334	regulatory region 519334	1633 bp distal
Rr519335	regulatory region 519335	825 bp distal
Rr519336	regulatory region 519336	within coordinates
Rr519337	regulatory region 519337	644 bp proximal
Tssr4954	transcription start site region 4954	212 bp upstream
Tssr4955	transcription start site region 4955	710 bp downstream
Tssr142077	transcription start site region 142077	607 bp downstream