rs50036777 SNP Detail

Summary

• ID
  rs50036777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGTCCC ATTTGTTGTT
  TTCTTCCCAG TTCCTTCTAA AACTCCCAAT TGCCATGTGA ACTATCATTC CAGGATGATT
  AAAAACATAG CTTTTACTCA TTCTCCGAGA AAAGGACATT TATAAAGATC TGGCCACTCG
  GCCATGATCC TATCATTCGT TGTCCCAAGA GAGACTGTAC GGTGAACTAG AAGGGCAATG
  Y
  GCTGTCTGAA ATGGGCCCTT TACAAAGCAG GCACAACCCA ACACTTACTA CTTTCGGGCT
  CAAGGATCCT GCTATTCTAT CCCAGGATCC CCGCCCCCCC CTCCCCCGTT ACTGGTGCTT
  TGTGGTAAAA GTATAGGAGA TGCAGAGGAC AGCTCCATTC CTTGAATGCT TAGTGTTTTA
  AAAATTAAGG CAGAGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61830025	NES17756880	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50036777					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61830025	NES17756880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1772 bp distal
Cpgi5783	CpG island 5783	623 bp distal
Gm7712	predicted gene 7712	856 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Rr481887	regulatory region 481887	1726 bp distal
Rr481888	regulatory region 481888	819 bp distal
Rr481889	regulatory region 481889	1240 bp proximal