rs50037012 SNP Detail

Summary

• ID
  rs50037012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25422165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGGCTG TCCTTTTCAG
  GTGTGGCAGC CCCAGCACCA ACTTGGAATG GAACTTGGCA CCCCTTGGCT ACGTTGGAGG
  CCTAGCTTAG CTAGGAAGGT TTGCTGCACT GGGGTCCAGG GCTACACATC GGCCATTAAA
  GACCAGTTTA TCAAAAGCCT GAGACAAGCA GCTGCCCATA TTTCAGAAAC AGGCAGGAAC
  Y
  CAAATCTGAA TGCACACCCA AGAATGCTCC CAGAAGCCTT ACCGGAAGGC CCATCTTGTA
  CTCACCTGCT GATACTGGTT ATAGCTGGGC TGAGGGTAGG TCTGGGCAGT TGGGGGTGGT
  GGGGGTGTAT AGGGGGCAGG ATTGTAGGGG CCATAGCTCC CATAGTTGTA GGCAGGTGGT
  GGCGGAGGTG GAGGTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60979902	NES16140047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50037012					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60979902	NES16140047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25422165 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155557	regulatory region 155557	636 bp proximal
Rr160908	regulatory region 160908	236 bp proximal
Rr170211	regulatory region 170211	165 bp distal
Tssr65169	transcription start site region 65169	145 bp upstream
Tssr71293	transcription start site region 71293	1012 bp upstream
Tssr71294	transcription start site region 71294	116 bp downstream
Tssr71295	transcription start site region 71295	185 bp downstream
Tssr71296	transcription start site region 71296	1993 bp downstream