rs50039989 SNP Detail

Summary

• ID
  rs50039989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124222250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTAGCAC CAGCGCTCAT
  CTCTGCTTCA CATGGATAGA TGCCATGTGA CCTTCGGCAT CGTGTGCCTG AGCCATGACT
  TCGGCACCAA GACGTGAGGA CTGTGCCCTC AACTGGGAGC CCAGGCCAAC CCAGAGAAGA
  AAATGAATAC ACCACTCTCG GAGAACACAT AGCGTGACAC TGATGACACC TGGGTGCCAA
  S
  CATTCAAAGC CACAGTAGGA CCTGTCATGG GTCTGGATGC CACCCACATA GGCCACAAAA
  CTCAGCAGCA GCAGCTGAGG GATGCCAAAG GCCATTTCCT TCTTCCAGGT GTGTCTTCCA
  CCTTCTAGAA CCAGGAAGAC CTTGCTGCTG GCACAGCTCC AGGCCATGCT GGTCCCACCC
  CTCTGAGGGG TGGCGCTCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60835695	NES16008610	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50039989					SNP	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835695	NES16008610	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124222250 () rs orientation: forward

Symbol	Name	Function Class
Abcb9	ATP-binding cassette, sub-family B member 9	within coordinates
Rr109254	regulatory region 109254	1450 bp distal
Rr109255	regulatory region 109255	151 bp proximal
Tssr53310	transcription start site region 53310	1058 bp upstream
Tssr53311	transcription start site region 53311	700 bp upstream