rs50040396 SNP Detail

Summary

• ID
  rs50040396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52651272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAACTAA AAAGTCTTCT
  AAGAGAAAAA TGTCATTATT CCCGGGGTGC TTGGGGTTTA GTATTACCTA CCTGTTACCG
  CGAAACTCCA TCTTATAAAG ATATATACAA AGTTGCCAGC ATTGTAAACT AGAATCTCAG
  TTTACACCCA ATGTACTTTA TTTAACACTA CAGAGAGATA ACAAAAATCG AGGTTGCAAA
  M
  TATGGAACGC TTCACGAATT TGCGTGTCAT CCTTGCGCAG GGGCCATGCT AATCTTCTCT
  GTATCGTTCC AATTTTAGTA TATGTGCTGC CGAAGCGAGC ACGATCTTAA GGCCTAACCG
  TGGACTATAT AAGGACTCAG AAAATCAGAT TCTTTAACTT AGGGTGATTT TAGTGCTTAC
  GATCCTCGAA CTCCTCCGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423979	NES15399385	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50040396					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423979	NES15399385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52651272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4596	CpG island 4596	696 bp distal
Cpgi4597	CpG island 4597	152 bp proximal
Gm23296	predicted gene, 23296	within coordinates
Gm24859	predicted gene, 24859	595 bp downstream
Gm35239	predicted gene, 35239	348 bp upstream
Gm59577	predicted gene, 59577	within coordinates
Rr369517	regulatory region 369517	195 bp upstream
Rr403283	regulatory region 403283	535 bp downstream
Rr403284	regulatory region 403284	within coordinates
Rr466026	regulatory region 466026	1606 bp distal
Rr466027	regulatory region 466027	within coordinates
Rr466028	regulatory region 466028	394 bp proximal