rs50040657 SNP Detail

Summary

• ID
  rs50040657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:71880432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGCGTGG ATCTGGAACT TGCTTTGTCC CAGGCTGACC
  TTGAACTCAG AGATCCTCCT TCAGTCTTCT GGGATTAAAG GCATGTAATA TCTTGCCTGG
  R
  CCTAAGCTTT TCATGGCCAC TATACCTCAA GATCTCCATG CCAAGATCCA GGTCAGAAAC
  TTGTCTCTTC CTGCCTCAAC ATCCAGATCA CAGGTGAGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61837288	NES17769885	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50040657					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61837288	NES17769885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:71880432 () rs orientation: forward

Symbol	Name	Function Class
Gm40999	predicted gene, 40999	within coordinates
Rr1731	regulatory region 1731	1221 bp proximal
Rr280205	regulatory region 280205	505 bp proximal
Rr284862	regulatory region 284862	1769 bp proximal