rs50040793 SNP Detail

Summary

• ID
  rs50040793
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109485423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTTCA GTCATTGGTC
  TGTCATGGCC CAGAAATACT TGAGTTACAG TTTTTACCTA TCTGCTTAAG GCTGTTATTC
  ATATTTCGTT GCTGGGAATA TTTTTAAATC ATGAATGAAG TTGGCCTTCC TATACTCTAT
  AGTCATATGA CTTTAAGAAT TATTAGGGTA TGACACATAA TTAGGCAAAC AAAAATATTT
  C
  TGTTCATTTC AATGACTTAT TAAATGTAAT GATATTCTAA TAGAAACTTA GAGGAATCAT
  ATTAAATTAT AAATAGAAAC ACTCAAACCA CATTTTATTT ATGGTTAGCC ATGATTCTAA
  TGGGAACTAA GGCAACACTG ATTGTCAGAG CCTCCCTGCT GCCATGATCC TGTATCACCA
  ACGTGCCTGT CTTGCTTTGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320870014	CHEV_3_109381025	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50040793					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109485423 () rs orientation: forward

Symbol	Name	Function Class
Rr583434	regulatory region 583434	95 bp proximal
Vav3	vav 3 oncogene	Intron