rs50040838 SNP Detail

Summary

• ID
  rs50040838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114952593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT TTATTCAAGG GTGTGACCGG
  Y
  GGACATTTAA ACTAACCTGC ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145319423	ENSMUSSNP1006073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324534388	CHEV_13_115606265	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50040838					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114952593 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	1684 bp proximal
Gm34790	predicted gene, 34790	within coordinates
Rr280966	regulatory region 280966	1407 bp proximal
Rr389127	regulatory region 389127	1816 bp downstream