rs50040906 SNP Detail

Summary

• ID
  rs50040906
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21798127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGAGAAA AAAAATGTCA TCGTGGAAGT GTAGTATGTA
  CAGTGTATCC CACAGTGTTC CTTTTGTCCA CACTTCTTTC TTTACAAGTG TTCATTGCAA
  C
  GACTCACTGG TCTGGTATGA GGCCTCTGGC TTCTGCTGCA CTGTCTATAC TGGAATCTCA
  GTGGGGCTCG GCTTCTGCTA CACTGTCTAT ACTGGAATC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146353886	ENSMUSSNP3175029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50040906					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21798127 () rs orientation: forward

Symbol	Name	Function Class
Gm24886	predicted gene, 24886	1617 bp downstream
Gm39766	predicted gene, 39766	1785 bp downstream
Gpr158	G protein-coupled receptor 158	within coordinates
Rr41903	regulatory region 41903	1474 bp proximal
Rr372895	regulatory region 372895	within coordinates