rs50042095 SNP Detail

Summary

• ID
  rs50042095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45201668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AAGAGAGAGG GAGCTATGAT
  R
  GGGATGTAAA GTGAATAAAA AAGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077371	ENSMUSSNP3720042	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325166142	CHEV_16_45381418	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50042095					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45201668 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	830 bp downstream
Tssr4884	transcription start site region 4884	1385 bp downstream
Tssr4885	transcription start site region 4885	1422 bp downstream
Tssr4886	transcription start site region 4886	1754 bp downstream
Tssr141220	transcription start site region 141220	1294 bp downstream
Tssr141221	transcription start site region 141221	1317 bp downstream
Tssr141222	transcription start site region 141222	1438 bp downstream
Tssr141223	transcription start site region 141223	1451 bp downstream
Tssr141224	transcription start site region 141224	1470 bp downstream
Tssr141225	transcription start site region 141225	1494 bp downstream
Tssr141226	transcription start site region 141226	1546 bp downstream
Tssr141227	transcription start site region 141227	1600 bp downstream
Tssr141228	transcription start site region 141228	1642 bp downstream
Tssr141229	transcription start site region 141229	1658 bp downstream
Tssr141230	transcription start site region 141230	1811 bp downstream
Tssr141231	transcription start site region 141231	1905 bp downstream
Tssr141232	transcription start site region 141232	1957 bp downstream