rs50042268 SNP Detail

Summary

• ID
  rs50042268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32726969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGCCAA CATTGGTGCT
  TGTGTACCAT GTGTGTGCCT ATTGCTCAAA GAGTTCAGAA GAAGGCATTG GATCTCCCAG
  AACTGGAGTT ATAGGTGGCT GTGAGCTACC TTGTAGGTTT TAGAAATCAA AACCATGTCC
  TTTCCAAGAT TAACAAGTGC CCTTAACCTC TGAACCATAT CTCCAGCCCC ACCAATTCCT
  S
  CCCTGTCTTA TCTAACTCTT CCTCCTCAAA AATGTGTCAG AGGACTCCAT TGTCTGAATT
  AGGTCAGAGT TGAGCACTCT GTTTTCCTCT GTGGTATTGA GGTGACACAC TGACTGTCTT
  GTGCTCCCTA GAAAATGAAG GGTTCCACTA CTAGGCCAGC CACTTTTCCT ATTTTTCCAG
  AAGGCACCAC TGTGGCCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145473248	ENSMUSSNP3233530	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss325362204	CHEV_17_32644940	CHEVERUD	SCREENING_POP	f	SNP			G		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50042268					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32726969 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr392523	regulatory region 392523	1249 bp downstream
Rr525769	regulatory region 525769	1523 bp distal
Tssr143717	transcription start site region 143717	1555 bp downstream
Tssr143718	transcription start site region 143718	1522 bp downstream
Tssr143719	transcription start site region 143719	1494 bp downstream