rs50042369 SNP Detail

Summary

• ID
  rs50042369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG CCTGGAGCTC TTAACTGTTT
  Y
  TAGTTGTATA TGAAAGCATA TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61386156	NES16764720	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	C		T
ss136358666	ENSMUSSNP1988545	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss322927320	CHEV_9_41388502	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50042369					SNP	T	T	T	T	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386156	NES16764720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491715 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1489 bp upstream
Gm51670	predicted gene, 51670	1148 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1507 bp upstream
Rr677060	regulatory region 677060	915 bp distal
Rr677061	regulatory region 677061	431 bp distal
Rr677062	regulatory region 677062	within coordinates
Rr677063	regulatory region 677063	933 bp proximal
Rr677064	regulatory region 677064	1047 bp proximal
Rr677065	regulatory region 677065	1263 bp proximal
Rr677066	regulatory region 677066	1594 bp proximal
Rr677067	regulatory region 677067	1721 bp proximal
Tssr84512	transcription start site region 84512	750 bp downstream
Tssr84513	transcription start site region 84513	702 bp downstream
Tssr84514	transcription start site region 84514	527 bp downstream
Tssr84515	transcription start site region 84515	452 bp downstream
Tssr84516	transcription start site region 84516	428 bp downstream
Tssr84517	transcription start site region 84517	402 bp downstream
Tssr84518	transcription start site region 84518	284 bp upstream
Tssr84519	transcription start site region 84519	332 bp upstream
Tssr84520	transcription start site region 84520	484 bp upstream
Tssr84521	transcription start site region 84521	525 bp upstream
Tssr84522	transcription start site region 84522	549 bp upstream
Tssr84523	transcription start site region 84523	647 bp upstream
Tssr84524	transcription start site region 84524	828 bp upstream
Tssr84525	transcription start site region 84525	881 bp upstream
Tssr84526	transcription start site region 84526	912 bp upstream
Tssr84527	transcription start site region 84527	1581 bp upstream
Tssr88995	transcription start site region 88995	896 bp upstream
Tssr88996	transcription start site region 88996	856 bp upstream
Tssr88997	transcription start site region 88997	367 bp downstream