rs50043559 SNP Detail

Summary

• ID
  rs50043559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69571735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACCCGGT CCCCTGTATA GTCTCTTTCA TCTTTCAGTA
  CCCTGTAAAA CAAAAGTTTG ATTATCCAAC TGAGGACACC CTACTCCTTT CTCCAAGATC
  R
  GAACTGTTCT TCAGCATTGT CCCTCTAATC TCAGATACAG CTAAAGACAA ATCTAAAAAC
  TCATAACTTC AGCTCTTCCC AGCCAACCTC GTCCAGAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132360100	ENSMUSSNP1873688	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323731036	CHEV_11_69494411	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50043559					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69571735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	358 bp proximal
Rr450067	regulatory region 450067	216 bp proximal
Rr450068	regulatory region 450068	927 bp proximal
Rr450069	regulatory region 450069	1165 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1937 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	1123 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	1668 bp downstream
Tssr108773	transcription start site region 108773	244 bp upstream
Tssr108774	transcription start site region 108774	884 bp downstream
Tssr108775	transcription start site region 108775	913 bp downstream
Tssr108776	transcription start site region 108776	961 bp downstream
Tssr108777	transcription start site region 108777	994 bp downstream
Tssr108778	transcription start site region 108778	1050 bp downstream
Tssr108779	transcription start site region 108779	1085 bp downstream
Tssr108780	transcription start site region 108780	1161 bp downstream