rs50045992 SNP Detail

Summary

• ID
  rs50045992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131670888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCAACTT CATTTCACCT TCCCAGGGGC
  ACTTCCAACA GTGCTTTGCT GGAGCACCCC TATATCAAAT TTCAGAGCTT CTGTTTTATC
  TTAGAGAAAT AGAAGGACAA CTCAAGGCTG GGACAGTCTA GTTCAAGATG TCGTGGGGGA
  Y
  GGTGGGAAGC CGCATGGGCT CAGGGAGGAA CTCTCATTTG GTAGATTCCC ACACTGCTTT
  CCCATTGCAT TGGTGGCCAA GGGACCCACA GCTCTGCTCC CAAAGGCATC TGGGAACATG
  GTCATTGGCT CTGGTTCCTG GAAGGGATGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145481755	ENSMUSSNP6422723	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319975123	CHEV_1_133639727	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50045992					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131670888 () rs orientation: forward

Symbol	Name	Function Class
Rr19210	regulatory region 19210	1688 bp distal
Rr28486	regulatory region 28486	912 bp proximal
Slc26a9	solute carrier family 26, member 9	872 bp upstream
Tssr8660	transcription start site region 8660	861 bp upstream
Tssr8661	transcription start site region 8661	1028 bp upstream