rs50046969 SNP Detail

Summary

• ID
  rs50046969
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87194622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGACTG ACAAACTCGA
  GTCGGCTCAT GAACTACAAC TCCCAGCAGC TCAGGGGGCG GGGGCGGGGC CAGCCCGAAG
  GAGGGAGGCC ATCTAGTCCA ACCTTCGCTC TCTGGACCCC GCTAGGCCTC AGTCATCTTC
  TAGTCCCGAG AGCTGACTTT CTTGGCCGGC CGACCGGGCG AGATGCAAGC CGGGAAGGTC
  W
  GTGCCCCACG TCCGGGGATG AGGGTCTCTC CTGAGAAACG CGGAGAAGAG CTGTGGGGGG
  GGGCGGGGCT GAGAGCTCGC TTCTTCGCGT GGCGCCACAA CGACTCCCGG CGTGCACCTC
  GGCGCCCGCT CACTCTACAC CTGCGCGCTG GCCGCTGAAC CTTATGGTGG TGGTAGATTG
  GGCCGGGAAG GCTAAACTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451848	NES15431696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50046969					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451848	NES15431696	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87194622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gm6566	predicted gene 6566	1627 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	568 bp downstream
Rr403430	regulatory region 403430	25 bp downstream
Rr470321	regulatory region 470321	673 bp distal
Rr470322	regulatory region 470322	724 bp distal
Rr470323	regulatory region 470323	66 bp distal
Rr470324	regulatory region 470324	342 bp distal
Rr470325	regulatory region 470325	44 bp proximal
Tssr114506	transcription start site region 114506	647 bp downstream
Tssr114507	transcription start site region 114507	65 bp downstream
Tssr114508	transcription start site region 114508	56 bp downstream
Tssr114509	transcription start site region 114509	122 bp upstream
Tssr117156	transcription start site region 117156	372 bp upstream
Tssr117157	transcription start site region 117157	353 bp upstream
Tssr117158	transcription start site region 117158	35 bp downstream