rs50047661 SNP Detail

Summary

• ID
  rs50047661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGAAG CTCAGCAGTG
  ATGTCGCCTC AGCCATGGGC CCAAAGCAGG GAAAGGGAGG TGAAAAATGC CTCCAGTCCC
  TGAGCAAAAA AACCCACCAA TCCCTGAGCT TCCCACAAAC CCCCACCAAT CCCAGAATAG
  GAAACCTCAC CAATCTCTGA GCTCTCCAAG CTCAGGACTT GAAATCCCAC CAATCCTCAA
  Y
  CTGGAAATCT CTGCCCTGAA AAGCTCCATC CATAAGAAAT CCTATATAAG CCCTGCCCTT
  TGTTCAACAG CCTTGCTGTC TGCTCCTGGA AGCAGAGGCA GCCACTCCTG GATTTGTCCC
  CTCTCTCCCT GGACCCTCCC TATTTTGTTT TTTTTTTTGT TTTTGTTTTT TTTTAAATGA
  GATTTGATTC CTGATGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133164123	ENSMUSSNP5936632	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50047661					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1123 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	670 bp downstream
Lrrc61	leucine rich repeat containing 61	1464 bp upstream
Rr399635	regulatory region 399635	1184 bp upstream
Tssr56137	transcription start site region 56137	1442 bp upstream
Tssr56138	transcription start site region 56138	1596 bp upstream
Tssr60734	transcription start site region 60734	1323 bp downstream
Tssr60735	transcription start site region 60735	1340 bp downstream
Tssr60736	transcription start site region 60736	1383 bp downstream