rs50047918 SNP Detail

Summary

• ID
  rs50047918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153617183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG TGTTAGGGAT ACTGACTGAG
  R
  ACTAAAGGGT TCCTGGCAAC GGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145749154	ENSMUSSNP5718148	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50047918					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153617183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi870	CpG island 870	833 bp distal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	within coordinates
Rr420742	regulatory region 420742	1228 bp distal
Rr420743	regulatory region 420743	1078 bp distal
Rr420744	regulatory region 420744	1154 bp proximal
Tssr9477	transcription start site region 9477	1077 bp downstream
Tssr9478	transcription start site region 9478	897 bp downstream