rs50048770 SNP Detail

Summary

• ID
  rs50048770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123364665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCATGTAAGT ACTGGGAACC CAGGCCCTCT GCAAGAGCTT
  TAAGTATGTT CTTAACCTCT GAACCATCTC TCTACCCCAC ACCCCAGTTT CTATGTTTAC
  Y
  TACATTTATA GAGGCCTGAC ACAGTTTCAT ATTCTTTACC ACTTCAGTCT TGTGGGGAAT
  TCATGAGAGG AGACTGCTCA GATAGAGTTT TAATCTGATA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149193611	ENSMUSSNP6613071	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50048770					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123364665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	1502 bp proximal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	1588 bp upstream
Rr120365	regulatory region 120365	1696 bp distal
Rr124341	regulatory region 124341	1135 bp proximal
Rr399344	regulatory region 399344	1469 bp upstream
Tssr48774	transcription start site region 48774	1614 bp upstream
Tssr48775	transcription start site region 48775	1636 bp upstream