rs50049404 SNP Detail

Summary

• ID
  rs50049404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45108465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTCCAT GCTAGCTAGA
  GAGACACCGC CTCTCCCCAG CCCAGCAGTC CTCATCTGTA TTCTGTAATT ACCCCCATTT
  TCCAGTTTCT GACATCCTGG TGGGTTTAGT TGCTCTACAT ACTCCTATTG TCTACACTAG
  TCCTGCCACC ACTCCCTTCC AAGACGTCTA TCCGGATGCC CAAACTATGG GGATGGCAAG
  Y
  AAACGCACAT GCTCGGTAGT GCCCAATACC CCCGCTTCTT ACCTGCACAT CCTGGAAGAG
  TGCACGGCCC CCGCGATCGT TCTGAAACTC GAGGAGACGC TCCGCGCCCT CGCGCTTCTC
  CTCGGCCAAT TCGCGGAAGA AGTGGCCTAC GCCCTCCAGA GCCACGTCAT CCCGATCAAA
  AAAGAAGCCC TGCGGGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
ss61003436	NES16114255	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ
rs50049404					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003436	NES16114255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45108465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19060	CpG island 19060			within coordinates
Cpgi19061	CpG island 19061			783 bp proximal
Ftl1	ferritin light polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm10252	predicted gene 10252			428 bp upstream
Gm56125	predicted gene, 56125			844 bp upstream
Gm73429	predicted gene, 73429			1141 bp downstream
Gm73431	predicted gene, 73431			1968 bp upstream
Rr380754	regulatory region 380754			294 bp upstream
Rr646449	regulatory region 646449			1082 bp distal
Rr646450	regulatory region 646450			600 bp proximal
Rr646451	regulatory region 646451			1047 bp proximal
Rr646452	regulatory region 646452			1478 bp proximal
Rr646453	regulatory region 646453			1979 bp proximal
Tssr66539	transcription start site region 66539			955 bp downstream
Tssr66540	transcription start site region 66540			851 bp downstream
Tssr66541	transcription start site region 66541			620 bp upstream
Tssr72390	transcription start site region 72390			839 bp upstream
Tssr72391	transcription start site region 72391			817 bp upstream
Tssr72392	transcription start site region 72392			693 bp upstream
Tssr72393	transcription start site region 72393			628 bp upstream
Tssr72394	transcription start site region 72394			482 bp upstream
Tssr72395	transcription start site region 72395			358 bp downstream
Tssr72396	transcription start site region 72396			390 bp downstream
Tssr72397	transcription start site region 72397			647 bp downstream
Tssr72398	transcription start site region 72398			798 bp downstream
Tssr72399	transcription start site region 72399			1881 bp downstream
Tssr72400	transcription start site region 72400			1919 bp downstream