rs50050275 SNP Detail

Summary

• ID
  rs50050275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100854900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA TGGCAGGCTC TATACCAGCC
  R
  AACTGAATTG TCCGGACATC AGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137997098	ENSMUSSNP4220539	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss324138830	CHEV_12_102126851	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50050275					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100854900 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	within coordinates
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	303 bp distal
Rr471363	regulatory region 471363	721 bp distal
Tssr117330	transcription start site region 117330	777 bp upstream
Tssr117331	transcription start site region 117331	754 bp upstream
Tssr117332	transcription start site region 117332	740 bp upstream
Tssr117333	transcription start site region 117333	705 bp upstream
Tssr117334	transcription start site region 117334	683 bp upstream
Tssr117335	transcription start site region 117335	604 bp upstream
Tssr117336	transcription start site region 117336	560 bp upstream