rs50050475 SNP Detail

Summary

• ID
  rs50050475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126837876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACGAAGTG AGTAATCTCT
  GTGTAATAGA CCAGTAACAT TACAGATTTG GAAATAGACC TAAGGAGACT TTACCAAAAC
  TCATGGACAG GCAAAGGAAG GGAAGATGCA GAGTGGGGGT TATACTAAGG TAGCTGCGTT
  TCATCAGTAA TGTTTTAAAG GTCATTTAAA AATTCTAATA CAGCCAGGCA TGGTGGCACA
  Y
  GCCTTTAATC CCAGCACTCG GGAGGCAGAG GCAGACGGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAA AGTGAGCTCC AGGACAGCCA GAGATATAAA GAGAAACCCT GTCTCGAAAA
  ACCAAAAAAA AAAAAAAAAA AAAAATCTAA TACACTCTTA CAAGAAATTT CCACAGACAC
  ACATACTACC AATGTACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147516157	ENSMUSSNP6726347	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320498723	CHEV_2_126821692	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50050475					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126837876 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1190 bp distal
Rr564431	regulatory region 564431	713 bp proximal