rs50051817 SNP Detail

Summary

• ID
  rs50051817
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTCTCT ACTTCCTCAT
  AGCTCAGGCT GCCCCTGGAG AGCTCCAAAC AGAAGGTTTT TGTTGAGCCA CGTGTCACCG
  TGGTCCCAGT TAGCACTGTG GTGCTCCGCT TAGTCAAAAC CTTGCACCAG TCAGAGACCA
  CAGGGACTCT GAGGCTTAAA CCTCACACTA GCCACAGAGT ATGGGTATTC TGATCCCCAA
  W
  CTGCCAGTCA TCTCTTGAGT CAGGGACCAA TGATTTCTCT CAAAACAGTC GCTAAAGTTC
  TCGAGCCTGT GGGGTTTGTC TTCTTTTTAA AATAAGAGCA GATGGAGGTC CATCTGTCAT
  TCACTTGTGT CTGAGTTATC AACTATGGAG AAAGGTCTGT GATGGTGGGG GTGGGGCAGT
  GCCCCTCCCT GGGAAGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742442	ENSMUSSNP4824663	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50051817					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394266 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	108 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	813 bp upstream
Ighj2	immunoglobulin heavy joining 2	1131 bp upstream
Ighj3	immunoglobulin heavy joining 3	1514 bp upstream
Tssr115504	transcription start site region 115504	406 bp downstream
Tssr118008	transcription start site region 118008	1995 bp upstream
Tssr118009	transcription start site region 118009	1984 bp upstream
Tssr118010	transcription start site region 118010	1846 bp upstream
Tssr118011	transcription start site region 118011	1748 bp upstream
Tssr118012	transcription start site region 118012	1513 bp upstream
Tssr118013	transcription start site region 118013	1498 bp upstream
Tssr118014	transcription start site region 118014	1394 bp upstream
Tssr118015	transcription start site region 118015	1298 bp upstream
Tssr118016	transcription start site region 118016	1144 bp upstream
Tssr118017	transcription start site region 118017	804 bp upstream
Tssr118018	transcription start site region 118018	261 bp upstream
Tssr118019	transcription start site region 118019	205 bp upstream
Tssr118020	transcription start site region 118020	160 bp upstream
Tssr118021	transcription start site region 118021	43 bp upstream
Tssr118022	transcription start site region 118022	14 bp upstream
Tssr118023	transcription start site region 118023	140 bp downstream