rs50051919 SNP Detail

Summary

• ID
  rs50051919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3844662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAATTCT CTAACCTTTC
  GTGCTCACAT TCTTGGATTT CCACGTCCAA GTTTCTTGGC TCATGTTCCT TCCTTTAAAG
  CCCGCTGAGG GTCTCAGCAG CGCACCCTCT TCTCCTCCAG GACCCCATGG CGCAGGACCC
  TATGACTGCA GACACCACAG GGTCTCCTCC TCACCCCAAG GCCTGTTGAC CCACAGTCTT
  Y
  ATCATCCTAA AGTCAAGCAG AGCAGCCTAC GGTCGAGAAC TTGGGAGGCT GAGTAGCATT
  GATCCAAGCT CAAGGCTAGC CTGAGAAATC TAGTGAGTTT GAAGGCCAAG CTGGGCCAGA
  GAATGAGATT CTGTCTCAAA ACAAAACAAT AAGACAGTGA CCCTCAGCTC CAGTCCACCA
  GCAGGTGACC CGACATCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61337737	NES16944839	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	C	C	C		C	C	C	C		C
ss137098014	ENSMUSSNP862399	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss323872820	CHEV_12_3794662	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50051919					SNP	T	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337737	NES16944839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3844662 () rs orientation: forward

Symbol	Name	Function Class
Gm60243	predicted gene, 60243	within coordinates