rs50052753 SNP Detail

Summary

• ID
  rs50052753
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTAAAA TCCATCTATT
  CACCTTCTAT TGAAAGATGT TATAAACTTT CAAGCTAATC AAGATGGCTT TTTAAAGGCC
  AGGGGCCTTG TAACCAGTAA CACCAGAGTT TCAGAATGAG CCACAACCTT CATGAATAGC
  GTGATATTTG GAAGGACCCG CTTGAATCAA GTTTGCTTGG CTGGAACCCC TGGACATAGT
  A
  TAGACCCTTG AAGGAGATTT GAGAACTGGG TTCTAACCCT GGCTTTCTTA ATACCAGCTG
  TGTGAGCTTC CTAGGAATTC GTACGGGCTG TTTTATTCAT CTGCAAAATG ATTCCGTGCA
  GGCCTCCAAA ACTGTAATAG GAACTTTCCT TTTCCATCAA ACTGAGGAGT GGTGAGGTAA
  ACTGCTCTTG GGACTGAAAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133014960	ENSMUSSNP7086135	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50052753					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	724 bp proximal
Met	met proto-oncogene	1209 bp upstream
Rr626799	regulatory region 626799	719 bp proximal
Rr626800	regulatory region 626800	883 bp proximal
Rr626801	regulatory region 626801	926 bp proximal
Rr626802	regulatory region 626802	1458 bp proximal
Tssr55050	transcription start site region 55050	841 bp upstream
Tssr55051	transcription start site region 55051	964 bp upstream
Tssr55052	transcription start site region 55052	1158 bp upstream
Tssr55053	transcription start site region 55053	1235 bp upstream
Tssr55054	transcription start site region 55054	1294 bp upstream
Tssr55055	transcription start site region 55055	1310 bp upstream
Tssr55056	transcription start site region 55056	1336 bp upstream
Tssr55057	transcription start site region 55057	1501 bp upstream
Tssr55058	transcription start site region 55058	1541 bp upstream
Tssr55059	transcription start site region 55059	1580 bp upstream