rs50052907 SNP Detail

Summary

• ID
  rs50052907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGTCC GCGGATGCTC
  AGAATGCCCT TGGAAGAGAA CCTTCCTGTT GCCGCAGACC CCCCGCGCGG TCGCCCGCGT
  GTTGGTCTTC TGGTTTCCCT GTGTGCTCCT CGCATGCATC CTCTCTTGGT GGCCGGGGCT
  CGTCGGGGTT TTGGGTCCGT CCCGCCCTCA GTGAGAAAGT TTCCTTCTCT AGCTATCTTC
  Y
  GGAAAGGGTG CGGGCTTCTT ACGGTCTTGA GGGGTCTCTC CCGAATGGTC CCCTCGAGGG
  CTCGCCCCCT GACCGCCTCC CGTGCGCGCA GCGTTTGCTC TCTCGTCTAC CACGGCCAGC
  GCCTCCCCGC TCCGAGTTCG GGGAGGGATC ACGCGGGGCA GAGCCTGTCT GTCGTCCTGC
  CGTTGCTGCG GAGCCATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62722070	NES17331407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50052907					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62722070	NES17331407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1255 bp proximal
Rr331227	regulatory region 331227	207 bp distal
Rr331228	regulatory region 331228	194 bp proximal
Rr331229	regulatory region 331229	1194 bp proximal
Rr339832	regulatory region 339832	within coordinates
Tssr148051	transcription start site region 148051	587 bp upstream
Tssr148052	transcription start site region 148052	373 bp upstream
Tssr148053	transcription start site region 148053	267 bp upstream
Tssr148054	transcription start site region 148054	215 bp downstream
Tssr148055	transcription start site region 148055	459 bp downstream
Tssr148056	transcription start site region 148056	801 bp downstream
Tssr148057	transcription start site region 148057	1206 bp downstream
Tssr148058	transcription start site region 148058	1827 bp downstream
Tssr148059	transcription start site region 148059	1862 bp downstream
Tssr148060	transcription start site region 148060	1983 bp downstream