rs50053183 SNP Detail

Summary

• ID
  rs50053183
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18092891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA TATATCTGCT ATTAACTTCT
  W
  ACATCCAGAT GTATCTACAC ACACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145227564	ENSMUSSNP516084	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325312348	CHEV_17_18009593	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50053183					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18092891 () rs orientation: forward

Symbol	Name	Function Class
Rr340653	regulatory region 340653	515 bp distal
Tssr5021	transcription start site region 5021	1479 bp downstream
Tssr5022	transcription start site region 5022	1456 bp downstream
Tssr5023	transcription start site region 5023	922 bp upstream
Tssr142818	transcription start site region 142818	657 bp downstream
Tssr142819	transcription start site region 142819	1110 bp upstream