rs50053927 SNP Detail

Summary

• ID
  rs50053927
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAAGGTTA AGGACCACAG GGTGTCTCAG GCTAGGCCAA
  GTATGGGTTC TGGTCCTGAA AGAAAAGCTG TGTCCGAATC AAGTGGCTGG GATCTTCTGG
  G
  TGACAGTCCT TGATGAGGCC TCTACAGCCA TCAGAGTAGA GGGTGGGGGT GGGATAGCTG
  CCATATTTAT TGGTTCATCT TATTTTGGAT TTATTAAGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148469608	ENSMUSSNP1601112	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322116608	CHEV_7_19763058	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50053927					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	899 bp distal
Cpgi18451	CpG island 18451	416 bp proximal
Cpgi18452	CpG island 18452	1248 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	1098 bp upstream
Rr155272	regulatory region 155272	567 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	1269 bp downstream
Tssr64791	transcription start site region 64791	1235 bp downstream
Tssr64792	transcription start site region 64792	1197 bp downstream
Tssr64793	transcription start site region 64793	1172 bp downstream
Tssr64794	transcription start site region 64794	1016 bp downstream
Tssr64795	transcription start site region 64795	494 bp upstream
Tssr64796	transcription start site region 64796	1272 bp upstream