rs50054125 SNP Detail

Summary

• ID
  rs50054125
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCACACG GACCCACGCC
  GCCAGCGTGA TCCCCACTAA GCAGCAGGGG TTCATGAGCA TAGCTACACA GTTTCACTGA
  AAAAACTTTT TCTTTGTTCC CGGGTTTACT GGGAGGCTAG GAGAAAAACG CGGGTCAAAG
  TCACCCTAAC TTAAAAAGTC AGGAATTCTT CGTCCTTATA TAGTCCACGG CTAGACACTA
  S
  GATCGTGCTC GCTTCGGCAG CACATATACT AAAATTGGAA CGATACAGAG AAGATTAGCA
  TGGCCCCTGC GCAAGGATGA CACGCAAATT CGTGAAGCGT TCCATATTTT GGCTCTGCTT
  ACTATGAACA GGTCATTGGA CCAAATTCCA AACAATAACT TTTGACTTCT CCCTCACAGC
  GTCTCCAAGT CAACCCAGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424001	NES15399374	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	C	C	G	C	C	G	C
ss137738348	ENSMUSSNP3295442	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50054125					SNP	G	G	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424001	NES15399374	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650566 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1461 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	858 bp proximal
Gm23296	predicted gene, 23296	702 bp downstream
Gm24859	predicted gene, 24859	5 bp upstream
Gm35239	predicted gene, 35239	1054 bp upstream
Gm59577	predicted gene, 59577	642 bp downstream
Rr369517	regulatory region 369517	901 bp upstream
Rr403283	regulatory region 403283	within coordinates
Rr403284	regulatory region 403284	633 bp upstream
Rr466025	regulatory region 466025	1476 bp distal
Rr466026	regulatory region 466026	900 bp distal
Rr466027	regulatory region 466027	571 bp proximal
Rr466028	regulatory region 466028	1100 bp proximal
Tssr116285	transcription start site region 116285	1435 bp upstream
Tssr116286	transcription start site region 116286	1412 bp upstream