rs50054483 SNP Detail

Summary

• ID
  rs50054483
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30095401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTGCT ACACCTAGCT
  AGCTAGCTAT GGCTTGAGAG CTCTGTTGAC CAGAGCCACT ACACACAGCC ACTCCAGCAT
  GAAGAACTTG CATAGCAGCT GGCTTCCCCA AGTAGATGTC CCAATCCAAC CAGAGGTGCT
  TGTGGCCTTT TCTAATGTAG CCTCAAACTC TCTTCAAATG ATCTTTTCCA TTCTAGTTGT
  K
  TCCTTTTTAG AAAATTATGC TGAGGATCAA ATCCAGGGTC TTATACATGA TAATTAAGTA
  CCATAACCAG CCCTCACTGG GGGATTCTAG GCAGGGGCTG TACCACTGAG CCACGCCCCC
  AGACACTCAC TGGGGGATTC TAGGCAGGGG CTCTACCACT GAGCCATGCC CCCAGCTCCA
  TTCTTCGAGC TTTGATGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991162	NES16138909	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50054483					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991162	NES16138909	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30095401 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	1426 bp upstream
Rr155979	regulatory region 155979	801 bp distal
Tssr2182	transcription start site region 2182	1596 bp upstream
Tssr2183	transcription start site region 2183	1148 bp downstream
Tssr71732	transcription start site region 71732	1666 bp upstream
Tssr71733	transcription start site region 71733	1535 bp upstream
Tssr71734	transcription start site region 71734	1424 bp upstream
Tssr71735	transcription start site region 71735	1401 bp upstream