rs50055459 SNP Detail

Summary

• ID
  rs50055459
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA GCGTGAAAAC TTAGGTCTGA
  T
  TTCCACAATG CTCATAAAAA GCTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145462139	ENSMUSSNP2846124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319965140	CHEV_1_130484415	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50055459					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515575 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	361 bp downstream
Rr12058	regulatory region 12058	within coordinates
Rr28453	regulatory region 28453	1025 bp proximal
Tssr195	transcription start site region 195	897 bp upstream
Tssr13461	transcription start site region 13461	580 bp downstream
Tssr13462	transcription start site region 13462	766 bp downstream
Tssr13463	transcription start site region 13463	862 bp downstream
Tssr13464	transcription start site region 13464	919 bp downstream
Tssr13465	transcription start site region 13465	937 bp downstream
Tssr13466	transcription start site region 13466	1002 bp downstream
Tssr13467	transcription start site region 13467	1049 bp downstream
Tssr13468	transcription start site region 13468	1138 bp downstream
Tssr13469	transcription start site region 13469	1191 bp downstream
Tssr13470	transcription start site region 13470	1286 bp downstream
Tssr13471	transcription start site region 13471	1355 bp downstream
Tssr13472	transcription start site region 13472	1424 bp downstream
Tssr13473	transcription start site region 13473	1437 bp downstream
Tssr13474	transcription start site region 13474	1493 bp downstream
Tssr13475	transcription start site region 13475	1517 bp downstream
Tssr13476	transcription start site region 13476	1534 bp downstream
Tssr13477	transcription start site region 13477	1595 bp downstream