rs50055771 SNP Detail

Summary

• ID
  rs50055771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35932245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAATGG GAAAAAAAGC
  AGTTGGGGAA TAAACTCAGA TAGTTTTAGA TATGTAGATT TCTCCTGCTA ACTAAGCCTT
  TGGTGAGATG TCCCTGTGTC TGAGAGGTTT ATTTTTATTT TATCGTCCCC CCCCCCCAAG
  GCTGTTTTCT GGTAGAGCGG GTTTGCTGTT GACATCTGAG TGAGACAGAG AGCTGAGGAG
  Y
  GTTTTGGATG TTTAGAAGTC CTCTCAGGTA AGGGATTGCT GGCTCTGGGG CTGCGGATAA
  GCTTGGAGCG GAGGCTGGCT GGGGCCTTAC CTTGTACCAC TGTATAGGAG GCCTCCACGG
  AGGAGAGGTT GGTGATCACA GTGACGTCAT CATCCCGGTT GGAGTTCTCA ATGTCAATGG
  TGATAGATTT CTCCATTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss131955121	ENSMUSSNP697735	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323639168	CHEV_11_35854920	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50055771					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35932245 () rs orientation: forward

Symbol	Name	Function Class
D11Mit108	DNA segment, Chr 11, Massachusetts Institute of Technology 108	362 bp proximal
Rr240121	regulatory region 240121	645 bp distal
Rr243857	regulatory region 243857	230 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates