rs50055828 SNP Detail

Summary

• ID
  rs50055828
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38177065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA TAAGCAGCCG AGCAGCCACG
  C
  AAGTAAAGGA GGAAATGTCT GAAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146362612	ENSMUSSNP3861459	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325801574	CHEV_19_38263107	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50055828					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38177065 () rs orientation: forward

Symbol	Name	Function Class
Fra10ac1	FRA10A associated CGG repeat 1	mRNA-UTR
Rr394383	regulatory region 394383	1411 bp downstream
Rr547247	regulatory region 547247	966 bp distal