rs50056693 SNP Detail

Summary

• ID
  rs50056693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134582751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG AGAAGTCCAG GGAGAGAGCC
  R
  GGCAGCCTCT GCCTGTAGCC AATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133782479	ENSMUSSNP7238906	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321980823	CHEV_6_134555806	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50056693					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134582751 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	within coordinates
Rr133397	regulatory region 133397	1551 bp distal
Rr133398	regulatory region 133398	1450 bp proximal
Rr147832	regulatory region 147832	1952 bp distal
Rr147833	regulatory region 147833	251 bp proximal
Tssr59244	transcription start site region 59244	17 bp downstream