CAGAA CAAACTTTCA AAGGTTATGG R ACTTCTGTGA TATCTAAGCT TGGCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
DBA/2J |
LG/J |
NOD/ShiLtJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61202771 | NES16711395 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | A | A | ||||
ss148929868 | ENSMUSSNP4535252 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | G | |||||
ss321627747 | CHEV_5_101289533 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||||||
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
DBA/2J |
LG/J |
NOD/ShiLtJ |
SM/J |
WSB/EiJ |
||||
rs50058096 | SNP | A | G | A | G | G | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61202771 | NES16711395 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr5:101008380 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm73351 | predicted gene, 73351 | 1502 bp upstream | ||||||
Gpat3 | glycerol-3-phosphate acyltransferase 3 | within coordinates | ||||||
Rr378349 | regulatory region 378349 | 1918 bp upstream | ||||||
Rr615578 | regulatory region 615578 | within coordinates | ||||||
Rr615579 | regulatory region 615579 | 1134 bp proximal | ||||||
Rr615580 | regulatory region 615580 | 1513 bp proximal | ||||||
Tssr47495 | transcription start site region 47495 | 1503 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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