rs50058437 SNP Detail

Summary

• ID
  rs50058437
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98944532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCTTAC TGGCTGAGCC
  ATTTCTCCAG CCCACCCCCC CTTTTTTTTT CTTAAAGAGA CAGAGTGTGG CTATCTATGT
  CCTAGATAAG TGTAGGACAG AGTGAATTCA CCCAGCGAGT GAACATTCTT TTTTTTTTTT
  TAAAGATTTA TTTATTGATT ATATGTAAGT ACACTGTAGC TGTCTTCAGA CACTCCAGAA
  A
  AGGGAGTCAG ATCTCCTTAC GGATGGTTGT GAGCCACCAT GTGGTTGCTG GGATTTGAAC
  TCCGGACCTT CGGAAGAGCA GTCGGGTGCT CTTACCCACT GAGCCATCTC ACCAGCCCGT
  GAGTGAACAT TCTAACCCAC TGAGCCAGCT GTCCGCTGCT GAGACCTATC TGAGAAAATC
  AAGTTTTGGC CTGCTGGTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148463797	ENSMUSSNP2683343	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50058437					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98944532 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1173 bp proximal
Gm41399	predicted gene, 41399	within coordinates
Rr311358	regulatory region 311358	438 bp proximal