rs50058635 SNP Detail

Summary

• ID
  rs50058635
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGCGTG CTGGGATGGG
  TGGGGGTCAC GGAACAAACC CTCTCCGCCC CCACACCCCA CGGACGCCAG GTATGGGATT
  ATGGAGCCAT CCACCTATAC ACCGTCTCAG TGCCCCCACG CCGCGACCAG AAACGGGTTC
  TGCCCCTGCG GAGGTGTTAA CACGTACCTC TTTTGCGTCT TCTCCGCCAT CGTCAAGCCC
  K
  GGTCTCAGGA AGAGCTGAGA TCGATTTTTG CAGCCTGGCT AGAGCGATGA TCTCTGCATG
  GGATTGCAGA GCCTGGCACG GCCTGGGAGA GGCGGGGCCT GAGAGACCCG CCTTCTGCTT
  TCCAGGTTCG CGCTTGCGTG CTGAGGATGG TTTGCTTTTC GGGGTTGGCT TGGCTTGCTT
  CGCTTCTGCC TCCTGGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592236	NES16320146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50058635					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592236	NES16320146	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	within coordinates
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	within coordinates
Tssr80889	transcription start site region 80889	663 bp upstream
Tssr80890	transcription start site region 80890	610 bp upstream
Tssr80891	transcription start site region 80891	within coordinates
Tssr80892	transcription start site region 80892	59 bp downstream
Tssr80893	transcription start site region 80893	340 bp downstream