rs50058656 SNP Detail

Summary

• ID
  rs50058656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20988395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTTTGT TTGTTTGTTT
  GTTTGTTTAT TTGAGACAGG ATTTCTCTAT GTAGTCCTGC TGGCCCAGGA ACTCAATCTA
  TAGACCAGAC TGGCCTCCAA CTCACCACCC ACCTGGCTCA GAAAGGACAG GTTGTTTTGT
  TTTGTTTTGT TTTTTTAATA TGCTAAAACT TGTTTAAATT TTCATATCTA GAAATCTCTA
  W
  AGCCTATATA GTCCCCACTG TCTTAGTTTT GGTTTTGAGA CAGGATCTCA CTGAAGTGCA
  CAGACTGCCC TCGAGACGAC ACGAGTGTAG CCAGCTTTGA GCTTCTGCTC CTTCTGCCTC
  TGGCTCCTAA GTAGCTGGGA ATGTAAGCCT GCACCAGCAA ACCTGGTGAT GGATTTCAGT
  CTAGACTTCA AGTCTGTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148726400	ENSMUSSNP5964071	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50058656					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20988395 () rs orientation: forward

Symbol	Name	Function Class
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Rr407023	regulatory region 407023	1787 bp proximal
Tssr6058	transcription start site region 6058	317 bp downstream
Tssr6059	transcription start site region 6059	312 bp downstream