rs50059023 SNP Detail

Summary

• ID
  rs50059023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTAGTT TATTCCACTA
  TACTTTAATA AGACATAAGA AATTATTTTT ATTCTTTCAT ATTTGTTAAA GCTTACTTGG
  TGGGCCAGAA TGTTATCTAT TCTAGAGGAA GTGAAATCCC ATGGGATTGT TTTCTGAAGG
  GACTCTGGCC CTTGTTGAGC ATGGCTCTGG CAGGCCTTGC CCTTCCCTCC CATTTCCTCT
  R
  CCTTTCTAAA AACCTTTGAT TAACATGCCT AAAGCTAGCC ACCAAGGTCT ATTCCCTTAT
  TTGGTCACTT CCTCCTGAGG CTGACTACCA AGGTCCAGCT ATCTAAATAT CGAAGTTTAA
  ACTTAAACAC CTTATCCTAA CTTGGGGTTT TCCCTTGTAC CTTTATAAAC CGCCATTTTC
  CTATGTGCCA AGCCTATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728907	ENSMUSSNP5890677	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50059023					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028704 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	487 bp downstream
Rr387210	regulatory region 387210	1561 bp downstream
Rr387211	regulatory region 387211	1372 bp upstream