rs50059282 SNP Detail

Summary

• ID
  rs50059282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:16855115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCAGGG TAGTCTGAAG
  AGGGAGAGGA CATCAGACAA CGGACTACCT TACAAAGGAA AAAAAAATCA TATAGAAGAT
  ATCTAGTATC CCAGTAAGAC AATAACTGCC CCCAATGATG ACAATGAGAC CACCTTTTCC
  CTTTGAGCCC AAGTCAAAAT AAACCTGATG ACCACATAAA ATGGAGATAA GCCATTTCCA
  Y
  CAGCATAAAG CTTCAAACAC CCAAACAAAC AACTGTGAGC AATAAAAAGT TTACTGTTGG
  AGACAGTGCA CTGTAGAAAA TTTAGCAAAG CATTAGGAAA ATCTCATGAG TTGATTCCAG
  TAGAGTATAT TCATGTGGTT GGCAGTCACA TTAATGTATG ATGAAGTTAT TGCTTTCTTC
  TCTCTTGCAG GCCTCAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52152671	NES15235038	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50059282					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52152671	NES15235038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:16855115 () rs orientation: forward

Symbol	Name	Function Class
Gm20125	predicted gene, 20125	within coordinates
Gm66102	predicted gene, 66102	191 bp upstream
Rr427987	regulatory region 427987	241 bp distal