rs50059566 SNP Detail

Summary

• ID
  rs50059566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90491174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGGCAC ACAGACATAC
  ACATCAACTA AAACAGTAAA TAAACAAAAT TTCCAAAAAT AGAATAAACC AAGAGGCTGG
  TGGATAGCTC CACCGAGGAA GGGCTTTGCA TAAGAGTACA GGGCACGGGC AGAGGTTTGG
  GGGCATGAAA GAGTATGACC TATGCCTCAG CAAGGTAGTG TGCCTAGGAT AGTATGCATT
  Y
  CCTTGACCTT CTAATTCACC ATGTCCTTTA ATCTGGAGAG ATCTGAGGTT TTAAATAGGT
  ACCCTGGTGG CAGAGCCGAG GAGGGTTTAG AGTGAGGCCC AGGAGCAGGG GTGGGAGGAG
  CATCTGGGTG TGCCTGCAGC AGGGCCAGAT GAATTGGAAG AGGCCTAAAG CAGCATGGAC
  AGGGTCCAGA CCTGTTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424348	NES15923778	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50059566					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424348	NES15923778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90491174 () rs orientation: forward

Symbol	Name	Function Class
Rr854	regulatory region 854	166 bp proximal
Rr69093	regulatory region 69093	1174 bp distal
Rr69094	regulatory region 69094	27 bp proximal
Rr69095	regulatory region 69095	1627 bp proximal
Rr81998	regulatory region 81998	within coordinates
Rr83342	regulatory region 83342	1436 bp distal
Rr367471	regulatory region 367471	1410 bp upstream
S100a3	S100 calcium binding protein A3	792 bp upstream