rs50059615 SNP Detail

Summary

• ID
  rs50059615
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCTCC TCTGTGAAAA
  ATTACACACA CACACACACA CACACACACA CACACACACA CACGCAGAGG CATGCATGCA
  CACACATGTA CATTTGTATA CACACAAAGC AGAGCAAAAG AAACAGAGAG GCAGAAAGCA
  AGAAAATCAA TTGATGTATC AGTCAATCAG TCAACCATAG CCCCCTATAT TCTTCAAAGA
  S
  GGAACAACCT TGTGAGTGTG CCATTTGCCT GATTTAACAA CTTCTGTTAC TTAGAGATTT
  TCTGCAGTGC TAAAGCAACA TCTCTTATAT CAAGGCACAA TGCCTAAGTG TCCAGCCCAC
  CGTTTCCTAT CCATCAGAGC AAAGAAGCAG AAGGATGCAG GCCCATCCTC CTTGGGCTTG
  TACATTAGCA TTCCAAGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341854	ENSMUSSNP3473118	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50059615					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584120 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1250 bp upstream
Rr405932	regulatory region 405932	792 bp upstream
Rr546756	regulatory region 546756	760 bp proximal
Rr546757	regulatory region 546757	1261 bp proximal
Tssr156136	transcription start site region 156136	803 bp upstream
Tssr156137	transcription start site region 156137	1207 bp upstream