rs50060305 SNP Detail

Summary

• ID
  rs50060305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTAGAC TCCAGACTCC
  AGTAGAATTT TCTTCATAAT GAGTTGACCA TTTCTTCATT TGATTCCTAG ATTAACCATC
  TGTGAGCCAG AAAAGTTTAA CAACAATTAT TCTGCATGGA AAATGTAAAC CTCAAAAGCT
  AATTAAAACA TTTCAAAGTC AATTAAAAAC ATCTCAGGCC TAGCAATCCA GCCAATTCTA
  Y
  AGCTACAGCT CCTAAGCAGT CCAATATTAT TTCTGATAAT ATTCTCTTTT TATTCCCTAC
  GAAGATTGGC CACTTAATGG CAGAATGGTG CAGAAATGAT ACCTGAATGT GAAATTTAAA
  TATGTCTTTT GTGTCAAGGC ACACTTTCTT TCCTCTTCTT TTTTTTGTTT TTTTTGTTTC
  TTTATTTTTT TGTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss62937145	NES17409713	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs50060305					SNP	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937145	NES17409713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114938 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	within coordinates
Rr393006	regulatory region 393006	67 bp upstream
Rr531544	regulatory region 531544	575 bp proximal
Rr531545	regulatory region 531545	1606 bp proximal
Rr531546	regulatory region 531546	1950 bp proximal