rs50060344 SNP Detail

Summary

• ID
  rs50060344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCCAC CGCAAATGGG
  AACCACGATC TCGGATTGTG GTTCTAGACG CCCAAAATAA TTTCCGGGTA TCTCTCTGAT
  CTTTGGGCTT ATATTTTTTG GTCGTCAGAT CCGGGATGGT AAGGAGTGTT CTGGAGGGGC
  TGACAGGCCC GATGGTTCGA ATCTGAGAAC ACCGGTCCTA GGACCCCCCA AGGGCCAAGA
  M
  TTTAGGGTCT CGCCAGATCT GAGGACTACG GATTCCGGAT CTACAGGGTG CAGGGGTGCT
  GGACTGGAGT GTCCCGTCTC ACTTACGGAT CCGGCGGTCC GCGGTCTTGC TCGCCTGCTG
  CAGGGCCTCC GCTGTGTCCG GTTCGGGAGG GCGGGGCCGG TGACTCAGGC AGCTACTCCG
  GGTTAGACCC TGCCGCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148668652	ENSMUSSNP1229441	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50060344					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894344 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1890 bp distal
Cpgi18782	CpG island 18782	878 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1718 bp upstream
Rr400232	regulatory region 400232	1014 bp downstream
Rr400233	regulatory region 400233	116 bp upstream
Tssr65662	transcription start site region 65662	962 bp downstream
Tssr71696	transcription start site region 71696	1989 bp upstream
Tssr71697	transcription start site region 71697	1968 bp upstream
Tssr71698	transcription start site region 71698	1937 bp upstream
Tssr71699	transcription start site region 71699	1811 bp upstream
Tssr71700	transcription start site region 71700	1776 bp upstream
Tssr71701	transcription start site region 71701	1552 bp upstream
Tssr71702	transcription start site region 71702	1100 bp upstream
Tssr71703	transcription start site region 71703	886 bp upstream
Tssr71704	transcription start site region 71704	779 bp upstream
Tssr71705	transcription start site region 71705	757 bp upstream
Tssr71706	transcription start site region 71706	101 bp downstream
Tssr71707	transcription start site region 71707	113 bp downstream
Tssr71708	transcription start site region 71708	127 bp downstream
Tssr71709	transcription start site region 71709	302 bp downstream
Tssr71710	transcription start site region 71710	644 bp downstream