rs50060890 SNP Detail

Summary

• ID
  rs50060890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGACCAATGA TTTTTTTTTC TTTAAAATTT CAGCCAGATC
  ATATTTGATT GACAGTCCAC CTACTTACAA TGTGCACTAT GGTTACAAAA GCTGGGAAGC
  Y
  TTCTCCAACC TCTCCTACTA CACCAGGGCC CTTCCTCCCG TAGCAGATGA CTGCCCAACT
  CCCATGGGTG TGAAGGGTGA GTGTAAAGAA ATACAGACAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145704588	ENSMUSSNP3164952	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50060890					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1737 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	742 bp upstream
Tssr9222	transcription start site region 9222	1952 bp downstream
Tssr9223	transcription start site region 9223	1109 bp downstream
Tssr9224	transcription start site region 9224	1001 bp downstream
Tssr9225	transcription start site region 9225	876 bp downstream
Tssr9226	transcription start site region 9226	863 bp downstream
Tssr9227	transcription start site region 9227	785 bp downstream
Tssr9228	transcription start site region 9228	745 bp downstream
Tssr9229	transcription start site region 9229	732 bp downstream
Tssr9230	transcription start site region 9230	within coordinates
Tssr9231	transcription start site region 9231	71 bp upstream
Tssr9232	transcription start site region 9232	111 bp upstream
Tssr9233	transcription start site region 9233	584 bp upstream
Tssr9234	transcription start site region 9234	588 bp upstream
Tssr9235	transcription start site region 9235	628 bp upstream
Tssr9236	transcription start site region 9236	665 bp upstream
Tssr9237	transcription start site region 9237	684 bp upstream
Tssr9238	transcription start site region 9238	713 bp upstream
Tssr9239	transcription start site region 9239	754 bp upstream
Tssr9240	transcription start site region 9240	776 bp upstream
Tssr9241	transcription start site region 9241	802 bp upstream
Tssr9242	transcription start site region 9242	822 bp upstream
Tssr9243	transcription start site region 9243	946 bp upstream
Tssr9244	transcription start site region 9244	991 bp upstream
Tssr9245	transcription start site region 9245	1011 bp upstream
Tssr9246	transcription start site region 9246	1048 bp upstream
Tssr9247	transcription start site region 9247	1187 bp upstream
Tssr9248	transcription start site region 9248	1607 bp upstream
Tssr9249	transcription start site region 9249	1634 bp upstream
Tssr9250	transcription start site region 9250	1802 bp upstream
Tssr9251	transcription start site region 9251	1848 bp upstream
Tssr9252	transcription start site region 9252	1903 bp upstream
Tssr9253	transcription start site region 9253	1933 bp upstream
Tssr9254	transcription start site region 9254	1960 bp upstream
Tssr9255	transcription start site region 9255	1979 bp upstream
Tssr14130	transcription start site region 14130	796 bp upstream
Tssr14131	transcription start site region 14131	740 bp upstream